GgaEX0015710 @ galGal4
Exon Skipping
Gene
ENSGALG00000010538 | TTC27
Description
tetratricopeptide repeat protein 27 [Source:RefSeq peptide;Acc:NP_001012585]
Coordinates
chr3:30770959-30796782:-
Coord C1 exon
chr3:30796670-30796782
Coord A exon
chr3:30791573-30791639
Coord C2 exon
chr3:30770959-30771072
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCCTTTTCTTTACAGTAT
3' ss Score
10.39
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AATTGTGATTTAAATGACGATACAGTGCTGAATGAGATAAAATTAGCAGATGCTGATCAGTACCAGGTACCTGATTTGTGTGCAGAAGAGCTTGCTGTAATCCTCGGAATTTG
Seq A exon
TATAGACTTCCAAAAGAACAATCCAATACACAAATTAACTGAAGAGGAACTTTTGGCTTTTACTTCA
Seq C2 exon
TGTTTGCTCTCTCAACCGAAGTTCTGGGCCATTCAAACTTCAGCCTTACTTCTTCGGACCAAGCTTGAGAAAGGAAGCACTCGTAGAATGGAACGAGCAATGAAGCAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010538-'16-30,'16-24,20-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATGCTGATCAGTACCAGG
R:
TGTGTCTGCTTCATTGCTCGT
Band lengths:
181-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]