GgaEX0015710 @ galGal3
Exon Skipping
Gene
ENSGALG00000010538 | TTC27
Description
NA
Coordinates
chr3:32661605-32687428:-
Coord C1 exon
chr3:32687316-32687428
Coord A exon
chr3:32682219-32682285
Coord C2 exon
chr3:32661605-32661718
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCCTTTTCTTTACAGTAT
3' ss Score
10.39
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AATTGTGATTTAAATGACGATACAGTGCTGAATGAGATAAAATTAGCAGATGCTGATCAGTACCAGGTACCTGATTTGTGTGCAGAAGAGCTTGCTGTAATCCTCGGAATTTG
Seq A exon
TATAGACTTCCAAAAGAACAATCCAATACACAAATTAACTGAAGAGGAACTTTTGGCTTTTACTTCA
Seq C2 exon
TGTTTGCTCTCTCAACCGAAGTTCTGGGCCATTCAAACTTCAGCCTTACTTCTTCGGACCAAGCTTGAGAAAGGAAGCACTCGTAGAATGGAACGAGCAATGAAGCAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010538-'11-19,'11-15,14-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATGCTGATCAGTACCAGG
R:
TGTGTCTGCTTCATTGCTCGT
Band lengths:
181-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]