HsaEX0067889 @ hg38
Exon Skipping
Gene
ENSG00000018699 | TTC27
Description
tetratricopeptide repeat domain 27 [Source:HGNC Symbol;Acc:HGNC:25986]
Coordinates
chr2:32672272-32702920:+
Coord C1 exon
chr2:32672272-32672384
Coord A exon
chr2:32678856-32678922
Coord C2 exon
chr2:32702807-32702920
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTCTTAATTTAAAGCAC
3' ss Score
8.09
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
AATCTTGAGCTCAATGATGACACCATTCTGAATGACATAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGGATCTGTGTGCTGAAGAGATCGCTATTATTCTTGGAATCTG
Seq A exon
CACTAATTTTCAAAAGAATAACCCAGTGCACACATTAACTGAAGTGGAGCTTCTGGCATTTACATCA
Seq C2 exon
TGTTTGCTTTCACAACCAAAGTTCTGGGCCATTCAGACATCAGCCTTGATCCTCCGGACAAAACTTGAGAAAGGAAGTACTCGCCGAGTGGAACGGGCAATGAGGCAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018699_MULTIEX2-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAACAGTTCCAGATGCCG
R:
CCTCATTGCCCGTTCCACTC
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development