DreEX0081951 @ danRer10
Exon Skipping
Gene
ENSDARG00000007918 | ttc27
Description
tetratricopeptide repeat domain 27 [Source:ZFIN;Acc:ZDB-GENE-030102-1]
Coordinates
chr17:22898348-22904035:+
Coord C1 exon
chr17:22898348-22898446
Coord A exon
chr17:22898849-22898901
Coord C2 exon
chr17:22903870-22904035
Length
53 bp
Sequences
Splice sites
3' ss Seq
CATTACTCTCCTCCATTCAGAAT
3' ss Score
8.68
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
TTGGGTGTGTGGTTTTCCCTGGGCTGTGCATATTTTGCATTGGAAAGCTACGAAGGAGCCGCCAGAGCTTTTCAAAGATGCGTCGGACTGGAACCAGAT
Seq A exon
AATTCAGAAGCTTGGAACAACCTTTCCACGGCCTACATCAAACTGAGAGTGAA
Seq C2 exon
GGAGAAGGCGTTCCGCACCCTTCAGGAAGCGCTCAAGTGTAATTATGAGCGATGGCAGATCTGGGAGAATTTCATTGCGGTGTGCGTAGACCTGGGCGAGTTCAGTGAAGCTATCAGAGCCTACCATCGGCTCATGGAGCTCAAGGACAAATACAAGGACGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007918_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(47.8=100)
A:
PF134141=TPR_11=FE(25.4=100)
C2:
PF134141=TPR_11=PD(22.4=26.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGTGTGTGGTTTTCCCTG
R:
ACACTTGAGCGCTTCCTGAAG
Band lengths:
139-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]