GgaEX1060972 @ galGal3
Exon Skipping
Gene
ENSGALG00000010538 | TTC27
Description
NA
Coordinates
chr3:32623926-32628931:-
Coord C1 exon
chr3:32628833-32628931
Coord A exon
chr3:32627607-32627659
Coord C2 exon
chr3:32623926-32624091
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTTGTCATTATAGAAT
3' ss Score
8.72
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CTAGGTGTATGGTTTTCCTTGGGCTGTGCATACATTGCTTTAGAAGGCTATGAAGGTGCTGCAAAAGCTTTTCAGCGCTGTGTGACATTGGAACCAGAT
Seq A exon
AATGCTGAGGCCTGGAACAATTTATCAACTGCATATATCAGATTAAAGCAGAA
Seq C2 exon
AATCAAAGCATTTCGAACCCTCCAGGAAGCGCTCAAATGCAACTATGAGCATTGGCAGATTTGGGAGAATTATCTCCTCACCAGTACAGATGTTGGAGAGTTTTCAGAAGCAATTAAAGCTTATCATCGGCTCATGGACTTAAGAGAAAAGTACAAGGACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010538-'20-31,'20-30,21-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(47.8=100)
A:
PF134141=TPR_11=FE(25.4=100)
C2:
PF134141=TPR_11=PD(22.4=26.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTTCCTTGGGCTGTGCAT
R:
GTTGCATTTGAGCGCTTCCTG
Band lengths:
132-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]