HsaEX6012853 @ hg19
Exon Skipping
Gene
ENSG00000018699 | TTC27
Description
tetratricopeptide repeat domain 27 [Source:HGNC Symbol;Acc:25986]
Coordinates
chr2:33002949-33012216:+
Coord C1 exon
chr2:33002949-33003047
Coord A exon
chr2:33007693-33007745
Coord C2 exon
chr2:33012051-33012216
Length
53 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCTCTATCATTTCAGAAT
3' ss Score
10.5
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CTCGGGGTGTGGTTTTCTCTCGGTTGTGCCTATTTGGCCTTGGAAGACTATCAAGGTTCAGCAAAGGCATTTCAGCGCTGTGTGACTCTAGAACCCGAT
Seq A exon
AATGCTGAAGCTTGGAACAATTTGTCAACTTCCTATATCCGATTAAAACAAAA
Seq C2 exon
AGTAAAAGCTTTTAGAACTTTACAAGAAGCTCTCAAGTGTAACTATGAACACTGGCAGATTTGGGAAAACTACATCCTCACCAGCACTGACGTTGGGGAATTTTCAGAAGCCATTAAAGCTTATCACCGGCTCTTGGACTTACGTGACAAATACAAAGATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018699-'21-23,'21-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0771912=TPR_2=PU(93.9=93.9)
A:
PF134141=TPR_11=FE(25.4=100)
C2:
PF134141=TPR_11=PD(22.4=26.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGCATTTCAGCGCTGTG
R:
AATTCCCCAACGTCAGTGCTG
Band lengths:
140-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)