GgaEX1060972 @ galGal4
Exon Skipping
Gene
ENSGALG00000010538 | TTC27
Description
tetratricopeptide repeat protein 27 [Source:RefSeq peptide;Acc:NP_001012585]
Coordinates
chr3:30727374-30738284:-
Coord C1 exon
chr3:30738186-30738284
Coord A exon
chr3:30736960-30737012
Coord C2 exon
chr3:30727374-30727571
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTTGTCATTATAGAAT
3' ss Score
8.72
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CTAGGTGTATGGTTTTCCTTGGGCTGTGCATACATTGCTTTAGAAGGCTATGAAGGTGCTGCAAAAGCTTTTCAGCGCTGTGTGACATTGGAACCAGAT
Seq A exon
AATGCTGAGGCCTGGAACAATTTATCAACTGCATATATCAGATTAAAGCAGAA
Seq C2 exon
GTTTTGGCTATTCTGGTCAGAGCAGTAGTGGATGGAATGGCAGATCGCACTGGCGAAGCAGCAAGTGGATTGAAGGGGAAATTGCGAGAGCTGTTGGGCAGAGTGACTTCACGAGTGACAAATGATGGGGAAATCTGGAGACTTTATGCCCGACTTTATGGAAATGGACACAGTGATAGCAGTGAAGATATTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010538_MULTIEX1-6/7=5-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(47.8=100)
A:
PF134141=TPR_11=FE(25.4=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGCTATGAAGGTGCTGCA
R:
GCTCTCGCAATTTCCCCTTCA
Band lengths:
148-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]