RnoEX0094697 @ rn6
Exon Skipping
Gene
ENSRNOG00000042932 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:RGD Symbol;Acc:1305264]
Coordinates
chr6:21759486-21771276:-
Coord C1 exon
chr6:21771178-21771276
Coord A exon
chr6:21763575-21763627
Coord C2 exon
chr6:21759486-21759651
Length
53 bp
Sequences
Splice sites
3' ss Seq
TGGATTGTCTATTATTTTAGAAT
3' ss Score
6.98
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CTTGGGGTCTGGTTTTCTCTAGGCTGTGCCTACTTGGCCTTGGAAGACTATGGTGGCTCAGCGAAGGCATTTCAGCGTTGTGTGACCCTAGAGCCCGAC
Seq A exon
AATGCTGAGGCTTGGAACAATTTATCCACTTCCTATATTCGACTGAAACAAAA
Seq C2 exon
AGTCAAAGCTTTTAGAACGTTACAAGAAGCTCTCAAGTGTAACTATGAACACTGGCAAATCTGGGAAAACTACATCCTCACCAGCACTGACGTCGGGGAGTTTGGGGAGGCCATCAAAGCTTACCACCGGCTCCTGGACCTGCGAGACAAATACAAAGATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042932-'33-32,'33-31,34-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(47.8=100)
A:
PF134141=TPR_11=FE(25.4=100)
C2:
PF134141=TPR_11=PD(22.4=26.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGGCATTTCAGCGTTGTG
R:
CAAACTCCCCGACGTCAGTG
Band lengths:
142-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]