DreEX0086448 @ danRer10
Exon Skipping
Gene
ENSDARG00000074453 | zfx
Description
zinc finger protein, X-linked [Source:ZFIN;Acc:ZDB-GENE-061220-2]
Coordinates
chr24:16871705-16872659:+
Coord C1 exon
chr24:16871705-16871842
Coord A exon
chr24:16872145-16872279
Coord C2 exon
chr24:16872510-16872659
Length
135 bp
Sequences
Splice sites
3' ss Seq
GCATGTTCTTCCCCAAACAGATG
3' ss Score
9.08
5' ss Seq
ACGGTCAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GAGGCACAGTCGACATAGGAGACGCTGAGCTAGATGTGGATGAAACCGTGGAGCTGGTGGATTCTTCTGGACTGCCCATACGAGAGAAAATGGTGTACATGTCAATGGATGAAGCCAATCAAAGTCAGGATGACATCA
Seq A exon
ATGTGGCTAAAATCACAGATGAGGTCTACATGGAAGTGGTGGTTGGGGGTGAAGACCCTGGAAATGTTCAGAGGACACTTGAAAACGCATCACTTAGCAAAGACTTCATGCCTGTGGCTTGGGCAGCTGCTTACG
Seq C2 exon
GTGGGGAAGAGAGCGAAAGCTGTGAGAACCGGAATGGAGCAGCTAGTGCTCTGCTGCATGTTGATGAATCTGACATGATTGAAAGGCTCAGTCGGCAACGAAACAAGAACAGGGGCAAAAAACGCTCTGAATTTCGGCACATTCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074453-'11-12,'11-11,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.702 A=0.261 C2=0.471
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(14.6=100)
A:
PF047048=Zfx_Zfy_act=FE(14.2=100)
C2:
PF047048=Zfx_Zfy_act=PD(15.2=94.1),PF049598=ARS2=PU(15.9=43.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGATGAAACCGTGGAGC
R:
ATGTGCCGAAATTCAGAGCGT
Band lengths:
247-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]