RnoEX6025847 @ rn6
Exon Skipping
Gene
ENSRNOG00000005624 | Zfx
Description
zinc finger protein X-linked [Source:RGD Symbol;Acc:1562664]
Coordinates
chrX:63164472-63165761:-
Coord C1 exon
chrX:63165618-63165761
Coord A exon
chrX:63165125-63165274
Coord C2 exon
chrX:63164472-63164612
Length
150 bp
Sequences
Splice sites
3' ss Seq
TCATACAATTTTCTACTTAGATG
3' ss Score
6.9
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GTGGAACCGTAGACATTGTGGAAAGCGAGCCTGAGAACGAGCATGGGGTTGAACTGCTTGATCCAAACAACAGTATGCGTGTTCCCAGAGAAAAGATGGTTTATATGGCTGTTAATGACACTCAGCAAGAAGAGGAAGAATTGA
Seq A exon
ATGTTGCTGAAATTGCTGATGAAGTTTATATGGAAGTGATTGTTGGAGAGGAGGATGCTGCAGCCGCAGCTGCAGCCGCAGTGCATGAACAGCAAGTGGAGGACAACGAAATGAAAACCTTCATGCCGATTGCGTGGGCAGCTGCTTACG
Seq C2 exon
GTAATAATTCTGATGGAATTGAAAACCGGAATGGCACTGCAAGTGCCCTCTTGCACATAGATGAGTCTGCTGGCCTCGGCAGACTGGCTAAACAAAAACCAAAGAAAAGGAGAAGACCTGATTCCAGGCAGTACCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005624-'12-11,'12-10,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.808 A=0.206 C2=0.639
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PD(0.7=2.0),PF047048=Zfx_Zfy_act=PU(33.3=98.0)
A:
PF047048=Zfx_Zfy_act=FE(14.9=100)
C2:
PF047048=Zfx_Zfy_act=PD(13.4=93.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGAGCATGGGGTTGAACT
R:
TGTTTGGTACTGCCTGGAATCA
Band lengths:
250-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]