GgaEX1003531 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:121644493-121647315:-
Coord C1 exon
chr1:121647172-121647315
Coord A exon
chr1:121646946-121647080
Coord C2 exon
chr1:121644493-121644633
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTGATTTCTGTTTCTCTTAGATG
3' ss Score
9.12
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GGGGCACAGTAGACGTTGTGGAGAGCGAGCCAGAAAATGATCATGCAGTTGGCTTACTTGATCAAAATAGCAGTATTCGTATTCCAAGGGAGAAAATGGTTTACATGACCGTAAATGATTCTCAGCACGAAGACGAAGATTTAA
Seq A exon
ATGTTGCAGAAATAGCCGATGAGGTTTATATGGAAGTGATAGTAGGGGAGGAAGATGCAGCAGTCGCCCATGAACAGCAAATTGATGACAATGAGATTAAAACTTTCATGCCAATAGCATGGGCAGCAGCTTATG
Seq C2 exon
GTAATAATAACGATGGCATTGAAAGCCGGAATGGCACTGCAAGTGCTCTTTTGCACATAGATGAGTCAGCGGGACTTGGGAGACTGGCAAAGCAAAAACCAAAGAAGAAAAGGAGGCCTGAGTCCAGGCAGTATCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016327-'6-8,'6-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.755 A=0.217 C2=0.604
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(14.6=100)
A:
PF047048=Zfx_Zfy_act=FE(13.7=100)
C2:
PF047048=Zfx_Zfy_act=PD(13.7=93.8),PF054436=ROS_MUCR=PU(41.2=72.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGAGCGAGCCAGAAAAT
R:
TGGACTCAGGCCTCCTTTTCT
Band lengths:
253-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]