GgaEX1003531 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQX8]
Coordinates
chr1:117632254-117643542:-
Coord C1 exon
chr1:117642976-117643542
Coord A exon
chr1:117634706-117634840
Coord C2 exon
chr1:117632254-117632394
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTGATTTCTGTTTCTCTTAGATG
3' ss Score
9.12
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
AGATGTAGTCGACTCAGATATAACTGTGCATAATTTTGTTCCTGACGATCCAGATTCTGTAGTAATCCAAGATGTCATTGAGGATGTTGTTATTGAGGATGTTCAGTGCCCAGATATTATGGAGGAGCCAGACGTATCTGAAACTGTCATTATTCCTGAACAAGTGCTGGACACAGACGTGGCTGAAGAGGTTTCTTTGGCTCATTGCACTGTCCCAGATGATGTTTTGGCTTCAGACATAACAGCAGAAGCAATGTCTATACCAGAACATGTACTGACGAGCGAGTCAATGCATGTACCTGAAGTTGGACATGTAGAACATGTAGTTCATGATAATGTTGAAGAAGCAGATATTGTCACTGATACTCTGGGAACAGATGTTGTTTCTGAAGAGGTCTTGGTGGCAGACTGCGCATCGGAAGCAGTGATCGATGCCAATGGGATCCCTGTGGAACATCAAGACGAGAAGGGCAACTGTGAAGATTACCTGATGATTTCTC
Seq A exon
ATGTTGCAGAAATAGCCGATGAGGTTTATATGGAAGTGATAGTAGGGGAGGAAGATGCAGCAGTCGCCCATGAACAGCAAATTGATGACAATGAGATTAAAACTTTCATGCCAATAGCATGGGCAGCAGCTTATG
Seq C2 exon
GTAATAATAACGATGGCATTGAAAGCCGGAATGGCACTGCAAGTGCTCTTTTGCACATAGATGAGTCAGCGGGACTTGGGAGACTGGCAAAGCAAAAACCAAAGAAGAAAAGGAGGCCTGAGTCCAGGCAGTATCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016327_MULTIEX1-3/4=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=0.217 C2=0.604
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PU(42.6=73.7)
A:
PF047048=Zfx_Zfy_act=FE(13.7=100)
C2:
PF047048=Zfx_Zfy_act=PD(13.7=93.8),PF054436=ROS_MUCR=PU(41.2=72.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAAGAGGTCTTGGTGGCA
R:
CTGGACTCAGGCCTCCTTTTC
Band lengths:
242-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]