HsaEX0072707 @ hg38
Exon Skipping
Gene
ENSG00000005889 | ZFX
Description
zinc finger protein, X-linked [Source:HGNC Symbol;Acc:HGNC:12869]
Coordinates
chrX:24207712-24209040:+
Coord C1 exon
chrX:24207712-24207855
Coord A exon
chrX:24208218-24208370
Coord C2 exon
chrX:24208900-24209040
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTTTGTAACTTTCTACTTAGATG
3' ss Score
7.31
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTGGAACTGTAGACATTGTGGAGAGTGAGCCTGAGAATGATCATGGAGTTGAACTGCTTGATCAGAACAGCAGTATTCGTGTTCCCAGGGAAAAGATGGTTTATATGACTGTCAATGACTCTCAGCCAGAAGATGAAGATTTAA
Seq A exon
ATGTTGCTGAAATCGCTGACGAAGTTTATATGGAAGTGATCGTAGGAGAGGAGGATGCTGCAGCAGCAGCGGCAGCCGCCGCCGTGCACGAGCAGCAAATGGATGACAATGAAATCAAAACCTTCATGCCGATTGCATGGGCAGCAGCTTATG
Seq C2 exon
GTAATAATTCTGATGGAATTGAAAACCGGAATGGCACTGCAAGTGCCCTCTTGCACATAGATGAGTCTGCTGGCCTCGGCAGACTGGCTAAACAAAAACCAAAGAAAAGGAGAAGACCTGATTCCAGGCAGTACCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005889_MULTIEX1-15/16=14-16
Average complexity
S
Mappability confidence:
96%=95=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.851 A=0.212 C2=0.640
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PD(0.7=2.0),PF047048=Zfx_Zfy_act=PU(33.1=98.0)
A:
PF047048=Zfx_Zfy_act=FE(14.9=100)
C2:
PF047048=Zfx_Zfy_act=PD(13.2=93.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAGAGTGAGCCTGAGAA
R:
TCAGGTCTTCTCCTTTTCTTTGGT
Band lengths:
249-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development