DreEX0087683 @ danRer10
Exon Skipping
Gene
ENSDARG00000093176 | zgc:77118
Description
zgc:77118 [Source:ZFIN;Acc:ZDB-GENE-040426-2211]
Coordinates
chr15:35260663-35268256:-
Coord C1 exon
chr15:35268088-35268256
Coord A exon
chr15:35264355-35264508
Coord C2 exon
chr15:35260663-35260758
Length
154 bp
Sequences
Splice sites
3' ss Seq
CTCAAACTTCTCCTGTTCAGTCT
3' ss Score
5.35
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATTATAAGCAGTTGTGGCGATGGCTGATGGCTGCAGACCATGTGTTTTTATTTTGGTTGTTTTACTGCTGCTGCCCTCAGCCATCATGGCGTACAGGCCAGTGCTTATTGTTCACGGGCTGTTTGGTGGACCTGTACAGATGACACCGTTGGTGAACTTAATTAAAGAG
Seq A exon
TCTCATCCAGGTACGAGTGTGACTGCAGTATCTCTGTATGACTACACGGACAGTGTGAAGCCAATGTGGGATCAGGTGGAAGGCTTTAAAAAGGTTCTCCAACCCATCATTGAGAGTACTGGAGATGGTGTCCATCTTATCTGCTACTCGCAAG
Seq C2 exon
GTGGTTTGATATGTCGAGGAGTTCTTGCTACTCTTCCTCAACACAATGCTCACTCTGTGATATTCCTGTCTTCACCGCTAGCTGGCCAGTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093176_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=PU(11.0=54.0)
A:
PF126972=Abhydrolase_6=PU(30.6=96.8)
C2:
PF0208910=Palm_thioest=FE(13.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGCAGTTGTGGCGATGGC
R:
AGCTAGCGGTGAAGACAGGAA
Band lengths:
249-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]