DreEX0087948 @ danRer10
Exon Skipping
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21628614-21629249:-
Coord C1 exon
chr9:21629120-21629249
Coord A exon
chr9:21628898-21629025
Coord C2 exon
chr9:21628614-21628776
Length
128 bp
Sequences
Splice sites
3' ss Seq
TAATACCTGCTTCTCTTTAGATG
3' ss Score
7.16
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGCCCTGTATCGTACGCTGGCGGAGGGATCCTGAAGGATGTGAAGAATAAAGCTGTGCTCTGTAAGCCCCTCACCATGACCAAGGCCACATACTGTAAACCTCACATGCAGAGCAAACCACTGCAGACAG
Seq A exon
ATGAGGCAGATCTGGAGAGCTCAGGAAAGGAGTACATTCCTATTCCGATCCCTGTTCCTGTTTACGTCCCAGTACCCATGAACCTCTATTCTCAGGCCACGCCCACTTCTTTTGCAATACCTGTACCG
Seq C2 exon
GTGCCTGTGCCAGTGTTTCTACCAACCACGCTGCAGAACGCTGAGCAGATTGTGAAGACCATCAGAGAGCTCAAAGCCAAAGTTCCTTCTGATCCTCTAGAAGCCGATCTAATAGCGATGGCAGAAGTGATTGCACAAGAAGACGAGAAACCTAAATGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353-'22-17,'22-15,23-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=0.140 C2=0.218
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTATCGTACGCTGGCGGAG
R:
TGCCATCGCTATTAGATCGGC
Band lengths:
249-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]