GgaEX6006363 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:178288689-178290082:-
Coord C1 exon
chr1:178289953-178290082
Coord A exon
chr1:178289668-178289783
Coord C2 exon
chr1:178288689-178288860
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTGTTCTTTTAATAGAAG
3' ss Score
7.81
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGGTCAGCACCACCGCCTTCCCCAACCCCTAACAGAGAGATGAAGAACAAGGCTGTTCTGTGCAAGCCTTTGACAATGACAAAAGCCACGTACTGTAAACCTCATATGCAGACAAAATCTTGTCAGACAG
Seq A exon
AAGATGATTGGAAAAAAGAGTACGTCCCAGTGCCTATTCCTGTACCCATCTATGTCCCGGTGCCTATGAACATGTATAGCCAAACTGTTCCTGTTCCTACGTCGATTCCTGTTCCT
Seq C2 exon
GTGCCAGTTCCCATTTTCTTGCCCACTACTCTGGACAGCACTGAGAAAATCTTTGCAGCAATAGAAGACCTGAGGGGCAAAGTGCCCTCAAATCCTCTGGAGACGGAGCTACTGACCTTGTCAGGGATGGTGCCTGAACATGAGGGAAAAGCAGAAGTTTCTGATGTGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139-'44-44,'44-42,45-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.354 A=0.128 C2=0.397
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAACCCCTAACAGAGAGA
R:
CTCATGTTCAGGCACCATCCC
Band lengths:
255-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]