RnoEX0102030 @ rn6
Exon Skipping
Gene
ENSRNOG00000003707 | Zmym3
Description
zinc finger MYM-type containing 3 [Source:RGD Symbol;Acc:1564967]
Coordinates
chrX:71306117-71306934:-
Coord C1 exon
chrX:71306778-71306934
Coord A exon
chrX:71306427-71306536
Coord C2 exon
chrX:71306117-71306291
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCTTGTCTGCAGAAGAGT
3' ss Score
-0.36
5' ss Seq
CCGGTAATT
5' ss Score
6.28
Exon sequences
Seq C1 exon
ATCCCTGTGAAGCGAGTTATTTCAAGTGTGCCCACTCCTCCACCCCCACCACCCCCAGCAACACCCCGAAAAAACAAAGCTGCCATGTGTAAGCCACTGATGCAGAACCGGGGAGTCTCCTGCAAGGTGGAAATGAAGTCCAAAGGAAGTCAGACAG
Seq A exon
AGTGGAAGCCACAAGTGATTGTGCTGCCCATCCCAGTGCCCATATTTGTGCCAGTGCCTATGCATCTATACTGCCAGAAAGTCCCGGTGCCTTTCTCAATGCCTATCCCG
Seq C2 exon
GTGCCTGTGCCCATGTTCCTGCCCACTACCTTGGAGAGCACAGAGAAGATCGTGGAGACCATTGAGGAGCTGAAGGTGAAGATCCCATCCAACCCCTTGGAGGCTGACATCCTGGCCATGGCAGAAATGATTGCAGAGGCGGAAGAGTTAGACAAGGCCTCCTCTGATCTTTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003707-'23-27,'23-26,24-27
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.811 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGCTGCCATGTGTAAGCC
R:
GGCCTTGTCTAACTCTTCCGC
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]