BtaEX0041037 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008492 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:84697204-84698074:+
Coord C1 exon
chrX:84697204-84697369
Coord A exon
chrX:84697644-84697756
Coord C2 exon
chrX:84697900-84698074
Length
113 bp
Sequences
Splice sites
3' ss Seq
GACCCCTTTCTTGTCAATAGAAG
3' ss Score
6.18
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
ATCCCTGTGAAGACCCGACCAGCCCCTGCTGCTTCCACTCCTCCACCACCACCGCCACCACCCCCAGCAGCACCCCGCAAAAACAAAGCTGCTATGTGTAAACCACTGATGCAGAATCGGGGGGTCTCCTGCAAGGTGGAGATGAAGTCCAAAGGGAGTCAGACAG
Seq A exon
AAGAGTGGAAGCCACAGGTGATCGTGCTGCCCATCCCAGTGCCCATCTTTGTGCCAGTGCCTATGCATCTGTACTGCCAGAAAGTCCCGGTGCCTTTCTCAATGCCTATCCCG
Seq C2 exon
GTGCCTGTGCCCATGTTCCTGCCCACTACCTTGGAGAGCACAGACAAGATTGTGGAGACCATTGAGGAGCTGAAGGTGAAGATCCCGTCCAACCCCTTGGAGGCCGATATCCTGGCTATGGCAGAGATGATCGCAGAGGCTGAGGAGTTGGACAAGGCCTCATCTGACCTTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008492-'24-24,'24-22,25-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.821 A=0.079 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCCGCAAAAACAAAGCTG
R:
TTGTCCAACTCCTCAGCCTCT
Band lengths:
251-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development