MmuEX0053926 @ mm9
Exon Skipping
Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:98606871-98607633:-
Coord C1 exon
chrX:98607477-98607633
Coord A exon
chrX:98607184-98607296
Coord C2 exon
chrX:98606871-98607045
Length
113 bp
Sequences
Splice sites
3' ss Seq
AAGACTTTTCCTGTCTGCAGAAG
3' ss Score
7.35
5' ss Seq
CCGGTAATT
5' ss Score
6.28
Exon sequences
Seq C1 exon
ACTCCTGTGAAGAGAGCAACTCCAAGTGTGCCCACTCCTCCACCCCCACCGCCCCCGGCAACACCCCGCAAAAACAAAGCTGCCATGTGTAAGCCGCTGATGCAGAACCGGGGTGTCTCCTGCAAGGCGGAAATGAAGTCCAAAGGAAGTCAGACAG
Seq A exon
AAGAGTGGAAGCCACAAGTGATTGTGCTGCCCATCCCAGTGCCCATATTTGTGCCAGTGCCTATGCATCTATACTGCCAGAAAGTCCCGGTGCCTTTCTCAATGCCTATCCCG
Seq C2 exon
GTGCCTGTGCCCATGTTCTTGCCCACTACCTTGGAGAGCACAGAGAAGATCGTGGAGACCATTGAGGAGCTGAAGGTGAAGATCCCTTCCAACCCCTTGGAGGCTGACATCCTGGCCATGGCAGAGATGATTGCAGAGGCCGAAGAGTTAGACAAGGCCTCCTCGGATCTTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310-'33-31,'33-29,34-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.887 A=0.105 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCCCGCAAAAACAAAGC
R:
GCCTTGTCTAACTCTTCGGCC
Band lengths:
256-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: