GgaEX0007718 @ galGal4
Exon Skipping
Gene
ENSGALG00000005533 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chr4:2284765-2285982:+
Coord C1 exon
chr4:2284765-2284933
Coord A exon
chr4:2285519-2285634
Coord C2 exon
chr4:2285808-2285982
Length
116 bp
Sequences
Splice sites
3' ss Seq
TGTACTTTTGCTCTTGTCAGAGG
3' ss Score
6.31
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
Exon sequences
Seq C1 exon
TTGTCATCAAAGACCTCCTCAGCCCACATGTCTCCAGCCGCGCCGCCTCCTCCGCCCCCTCCAGTTCCAGCCACCCCTCGGAAGAACAAAGCTGCCATGTGCAAACCACTGATGCAGAACCGGGGTGTTTCCTGCAAAGTAGAAATGAAGTCCAAAGGATGTCAGACAG
Seq A exon
AGGCTGACTGGAAGCCCCAGGTGATTGTGTTGCCAATCCCAGTCCCGATCTTCGTGCCTGTGCCTATGCATATGTACTGCCAGAAAGTACCTGTGCCTTTCTCCATGCCTGTCCCG
Seq C2 exon
GTGCCTGTGCCAATGTTTCTACCCACCACACTGGAGAGCGCGGATAAGATTGTAGAGACAATTGAGGAGCTGAAGGTGAAGATCCCCTCCAATCCTCTAGAGGCTGACATCCTGGCCATGGCAGAAATGATTGCAGAGGCTGAGGAACTGGACAAAGCCTCCTCGGACCTGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGAAGAACAAAGCTGCCA
R:
AGGAGGCTTTGTCCAGTTCCT
Band lengths:
256-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]