HsaEX6052276 @ hg19
Exon Skipping
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:13054]
Coordinates
chrX:70465518-70466362:-
Coord C1 exon
chrX:70466203-70466362
Coord A exon
chrX:70465836-70465948
Coord C2 exon
chrX:70465518-70465692
Length
113 bp
Sequences
Splice sites
3' ss Seq
GACCCCTTTCTTATCCACAGAAG
3' ss Score
9.11
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
ATCCCTGTGAAGACCCGATCAGCTCCCACTGCTCCCACCCCTCCACCCCCACCACCCCCAGCAACACCCCGCAAAAACAAGGCTGCCATGTGTAAGCCACTGATGCAGAATCGGGGCGTCTCCTGCAAGGTGGAGATGAAGTCCAAAGGAAGTCAAACAG
Seq A exon
AAGAGTGGAAGCCACAGGTGATCGTGCTGCCCATCCCAGTGCCCATCTTCGTGCCAGTGCCTATGCATCTGTACTGCCAGAAAGTCCCGGTGCCTTTCTCGATGCCTATCCCG
Seq C2 exon
GTGCCTGTGCCCATGTTCTTGCCCACTACCTTGGAGAGCACAGACAAGATTGTAGAGACCATTGAGGAGCTGAAGGTGAAGATCCCTTCCAACCCCTTGGAGGCCGACATCCTGGCTATGGCAGAAATGATTGCAGAGGCTGAGGAGTTAGACAAGGCCTCATCTGACCTTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130-'24-24,'24-23,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.828 A=0.105 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACACCCCGCAAAAACAAGG
R:
ACTCCTCAGCCTCTGCAATCA
Band lengths:
247-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)