GgaEX6006363 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:183344806-183346199:-
Coord C1 exon
chr1:183346070-183346199
Coord A exon
chr1:183345785-183345900
Coord C2 exon
chr1:183344806-183344977
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTGTTCTTTTAATAGAAG
3' ss Score
7.81
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGGTCAGCACCACCGCCTTCCCCAACCCCTAACAGAGAGATGAAGAACAAGGCTGTTCTGTGCAAGCCTTTGACAATGACAAAAGCCACGTACTGTAAACCTCATATGCAGACAAAATCTTGTCAGACAG
Seq A exon
AAGATGATTGGAAAAAAGAGTACGTCCCAGTGCCTATTCCTGTACCCATCTATGTCCCGGTGCCTATGAACATGTATAGCCAAACTGTTCCTGTTCCTACGTCGATTCCTGTTCCT
Seq C2 exon
GTGCCAGTTCCCATTTTCTTGCCCACTACTCTGGACAGCACTGAGAAAATCTTTGCAGCAATAGAAGACCTGAGGGGCAAAGTGCCCTCAAATCCTCTGGAGACGGAGCTACTGACCTTGTCAGGGATGGTGCCTGAACATGAGGGAAAAGCAGAAGTTTCTGATGTGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139-'23-32,'23-31,24-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=0.000 C2=0.224
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAACCCCTAACAGAGAGA
R:
CTCATGTTCAGGCACCATCCC
Band lengths:
255-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]