HsaEX6039447 @ hg38
Exon Skipping
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger MYM-type containing 2 [Source:HGNC Symbol;Acc:HGNC:12989]
Coordinates
chr13:20036737-20061224:+
Coord C1 exon
chr13:20036737-20036909
Coord A exon
chr13:20059447-20059562
Coord C2 exon
chr13:20061053-20061224
Length
116 bp
Sequences
Splice sites
3' ss Seq
AATATGTTTTGTGTTTTTAGATG
3' ss Score
8.9
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GCTGCAAATTATTATACAAACAGGATTTTGCCAGACGTTTAGGATTGAGATGTGTTACTTGCAACTATTGTTCTCAGCTATGTAAGAAGGGAGCAACTAAAGAACTCGATGGTGTTGTGAGAGATTTCTGCAGTGAAGATTGCTGTAAAAAATTTCAGGATTGGTACTACAAG
Seq A exon
ATGATACTTGGAGGACAGAATATGTTCCAGTGCCTATCCCTGTGCCTGTGTATATCCCAGTTCCTATGCACATGTACAGTCAGAATATTCCTGTTCCTACTACAGTTCCTGTTCCT
Seq C2 exon
GTGCCAGTTCCTGTTTTTCTGCCTGCTCCATTGGACAGCAGTGAGAAGATTCCTGCAGCAATTGAGGAGCTAAAAAGCAAGGTTTCTTCAGATGCTCTTGATACAGAGTTGCTTACAATGACGGATATGATGAGTGAAGACGAGGGGAAAACAGAGACAACCAACATCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741_MULTIEX2-4/7=C1-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.214 C2=0.672
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(12.5=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000382871fB30564
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGCTATGTAAGAAGGGAGCA
R:
TCCCCTCGTCTTCACTCATCA
Band lengths:
250-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains