RnoEX0102011 @ rn6
Exon Skipping
Gene
ENSRNOG00000008734 | Zmym2
Description
zinc finger MYM-type containing 2 [Source:RGD Symbol;Acc:1593255]
Coordinates
chr15:37209491-37211807:+
Coord C1 exon
chr15:37209491-37209620
Coord A exon
chr15:37210805-37210920
Coord C2 exon
chr15:37211636-37211807
Length
116 bp
Sequences
Splice sites
3' ss Seq
CCCCATGTCTTGTTTTTCAGATG
3' ss Score
11.15
5' ss Seq
CCTGTACGT
5' ss Score
5.32
Exon sequences
Seq C1 exon
GGCTCAGCACCACCCCCTTCTCCTACACCAAACAAAGAGATGAAGAACAAAGCGATTCTTTGCAAACCTTTAACAATGACAAAAGCAACTTACTGTAAGCCTCACATGCAGACCAAGTCTTGTCAGACAG
Seq A exon
ATGAAAATTGGAAGACAGAGTATGTCCCAGTGCCTATTCCTGTGCCTGTGTATGTCCCTGTGCCTATGCACATGTACAGCCAGAGTATTCCTGTTCCTACCACAGTCCCTGTCCCT
Seq C2 exon
GTGCCCGTTCCTGTGTTTTTGCCTGCTCCATTGGAGAACAGTGAGAAGATTCCTGCCTCAGTTGAGGACCTCAAAAGCAAAGTGTCTTCAGATCCTCTTGATACAGAATTGCTTACAATGACGGATATGATGACTGAAGAGGAGGGGAAAACAGAGGCATCTAATATCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008734-'29-27,'29-26,32-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=0.000 C2=0.879
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000011684fB17067
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCGATTCTTTGCAAACCT
R:
ATGCCTCTGTTTTCCCCTCCT
Band lengths:
242-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]