BtaEX6056655 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36400270-36402180:-
Coord C1 exon
chr12:36402051-36402180
Coord A exon
chr12:36401232-36401347
Coord C2 exon
chr12:36400270-36400435
Length
116 bp
Sequences
Splice sites
3' ss Seq
ACTGCCTTCTGTGTCCCCAGATG
3' ss Score
12.29
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGTTCAGCACCACCCCCTTCTCCAACCCCCAACAAGGAGATGAAGAACAAGGCAGTTCTGTGCAAACCTTTGACTATGACCAAGGCGACCTACTGCAAACCCCACATGCAGAGCAAGTCCTGTCAGACAG
Seq A exon
ATGGCGACTGGAGGACGGAGTACGTGCCTGTGCCCATCCCTGTGCCTGTGTACATCCCAGTGCCCATGCACATGTACAGCCAGAGCATCCCCGTGCCCACCACCGTGCCTGTGCCC
Seq C2 exon
GTGCCAGTCCCTGTGTTTCTCCCTGCCCCCCTGGACAGTGGTGAGAAGACTGCTGTGCCCGAAGAGCTGAAAAGCACAGGTTCTTCAGATGCCCTGGGCACAGAGCTGCTGACCATGACGGACATGACTGAGGACGAGGGGAAGGCGGAAGGCGCCGACCTCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403-'35-33,'35-32,36-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=0.256 C2=0.946
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAACCCCCAACAAGGAGAT
R:
CTTCCCCTCGTCCTCAGTCAT
Band lengths:
254-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]