DreEX0088069 @ danRer10
Exon Skipping
Gene
ENSDARG00000077013 | znf280d
Description
zinc finger protein 280D [Source:ZFIN;Acc:ZDB-GENE-030131-2260]
Coordinates
chr7:52453954-52463850:+
Coord C1 exon
chr7:52453954-52454036
Coord A exon
chr7:52455937-52456163
Coord C2 exon
chr7:52463693-52463850
Length
227 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTTATTTTTTTAAGTTG
3' ss Score
7.34
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GAGAGAAAAATTTAATAGGCACAAGGAAATGCCCCAGATGTCAGAATGTGTTTCCTTTGGAGCCTTTAAAGATTCATATGAAG
Seq A exon
TTGTGCTGCCCTGAATTGTGGGACTCTGTGTTTCCCTCAACATCGAGGCCTGACAAGCAAATCATCACACCAAAAGTCGTTGAGTCCGATAAGGGCAAGCTCATCATGCTGGTTTCAGACTTCTACTATGGAAAAAGCGATGGGGATCCATCTCTGATGCCCAAAATCAAGTCCAACACTACCTTCAAGTGCAACAGCTGTTTAAAAATGCTCAAGAACAATATCAG
Seq C2 exon
GTTCATGAACCACATGAAGCATCACCTGGAGTTAGAGAAGCAGAACAGCGAGAGCTGGGAGAGTCACACTACATGCCAGCACTGTTACAGACAGTATTCAACTCCTTTTCAACTGCAGTGTCACATAGAAAGTGCCCACAGTCCTTTCGAGTCCAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077013_MULTIEX1-6/7=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.053 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF139121=zf-C2H2_6=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAAAATTTAATAGGCACAAGGA
R:
CTGGACTCGAAAGGACTGTGG
Band lengths:
238-465
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]