HsaEX0073344 @ hg19
Exon Skipping
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:25953]
Coordinates
chr15:56970862-56981348:-
Coord C1 exon
chr15:56981239-56981348
Coord A exon
chr15:56974452-56974675
Coord C2 exon
chr15:56970862-56971019
Length
224 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTCTCTTTCAGTAT
3' ss Score
12.49
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GTACAAATACCTCATCAAATCAGTCTAAAAATGGAACACCTTTTCCAAGAGCTTGTCCAAAGTGCAACATTCATTTCAATCTTTTGGATCCTTTGAAAAATCACATGAAG
Seq A exon
TATTGTTGTCCAGACATGATAAATAACTTTTTGGGACTGGCTAAAACAGAATTTTCAAGTACAGTAAATAAAAACACAACTATTGATTCAGAGAAAGGAAAATTGATCATGTTAGTTAATGACTTTTATTATGGAAAACATGAAGGAGATGTCCAGGAGGAACAGAAGACTCACACAACCTTTAAATGCTTCAGTTGCTTGAAAATTCTAAAAAATAACATTAG
Seq C2 exon
GTTTATGAACCACATGAAACACCATTTGGAACTTGAGAAGCAGAGCAGTGAGAGCTGGGAAAACCATACCACCTGCCAGCACTGCTACCGTCAGTTTCCCACACCATTTCAGTTGCAGTGTCACATCGAAAGTACACATACGCCCCATGAATTTTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.351 A=0.051 C2=0.037
Domain overlap (PFAM):
C1:
PF138361=DUF4195=PD(3.2=16.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAAATACCTCATCAAATCAGTCT
R:
TAGAAAATTCATGGGGCGTATGTGT
Band lengths:
268-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)