MmuEX0053170 @ mm10
Exon Skipping
Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72312651-72322610:+
Coord C1 exon
chr9:72312651-72312760
Coord A exon
chr9:72319092-72319315
Coord C2 exon
chr9:72322453-72322610
Length
224 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCATTCTCTTTTAGTAT
3' ss Score
10.74
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GTGCAAATTGTTCATCAAGTCAATCTAAAAATGGAACAACTTTTCCAAGAGCATGTCCCAAGTGTGATATTCACTTCAATCTTTTGGATCCTCTAAAAAATCACATGACG
Seq A exon
TATTGTTGTCCAGACATGATAAATAACTTTTTGGGATTGACTAAAGCAGACAATTTAAATTCAGCAAATGAAGCTAAGACTCTTGAATCAGAGAAAGGAAAATTGATAATGTTAGTTAATGACTTTTATTACGGAAAACATGAAGGAGACGTCCTGGAAGAACAGAAGACTCATACAACCTTTAAGTGCTTCAGTTGCTTAAAAGTTCTCAAAAATAATATTAG
Seq C2 exon
GTTTATGAACCACATGAAGCACCATTTGGAGCTCGAGAAGCAGAGCAGCGAGAGCTGGGAGAAGCACACCACGTGCCAGCACTGCTACCGGCAGTTCCCCACGCCCTTCCAGCTCCAGTGCCACATCGAGAGCACCCACACTCCTCATGAGTTCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535-'25-35,'25-34,29-35
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.067 C2=0.019
Domain overlap (PFAM):
C1:
PF138361=DUF4195=PD(14.0=16.2)
A:
NO
C2:
PF139121=zf-C2H2_6=PU(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAAATTGTTCATCAAGTCAATCT
R:
TCATGAGGAGTGTGGGTGCTC
Band lengths:
260-484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types