MmuEX0053170 @ mm9
Exon Skipping
Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72122706-72208148:+
Coord C1 exon
chr9:72122706-72122836
Coord A exon
chr9:72166899-72167122
Coord C2 exon
chr9:72208093-72208148
Length
224 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCATTCTCTTTTAGTAT
3' ss Score
10.74
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GGCGCCCAGCAGCCCCGCTCCGCGATGGGAGCCGGAGCGGCCTCGGCGTACACAGCCCGCGCTCCTCCCTCGCCTCCTCCTCTTTCTCCTCCTCCTCAGGGCTCCAGTCAGGCCGAGCCGCTCCGCTCACG
Seq A exon
TATTGTTGTCCAGACATGATAAATAACTTTTTGGGATTGACTAAAGCAGACAATTTAAATTCAGCAAATGAAGCTAAGACTCTTGAATCAGAGAAAGGAAAATTGATAATGTTAGTTAATGACTTTTATTACGGAAAACATGAAGGAGACGTCCTGGAAGAACAGAAGACTCATACAACCTTTAAGTGCTTCAGTTGCTTAAAAGTTCTCAAAAATAATATTAG
Seq C2 exon
GAAACAGCAAGACATAGTAGAGCTGAAGGAGAGCCAGGAGCATCACATTCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535_MULTIEX1-12/27=C1-27
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.067 C2=0.615
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGGCGTACACAGCCC
R:
CCAGAATGTGATGCTCCTGGC
Band lengths:
144-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: