GgaEX1003113 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:8651815-8655622:+
Coord C1 exon
chr10:8651815-8652059
Coord A exon
chr10:8653725-8653954
Coord C2 exon
chr10:8655465-8655622
Length
230 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCCCTTTCCATCTAGTAT
3' ss Score
9.09
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
ATGGTAGTAAAATGTTGTGTGTGGTCGCTCCTGTCACATCAGTTGCAGTTTCATTTCAAATAGTATGTTTTGCTAGAATAATAACTAACAAATCATTCCCATTGCAAATTCTGACTTTTGTATGGTGTTTTACAGACACAAATACTGCATCAAGCAACATTAAGAATGGAGGGCCGTTTCCACGAGCTTGTCCAAAGTGCAATATTCATTTCAATCTTATGGATCCTCTAAAAAATCATATGAAG
Seq A exon
TATTGTTGTCCAGATCTGGTTAATGACTTTTTTCTGGGAGTGGTCCAAACGGAATGTTCTACTGCAATGAGCAAGACTACTGAATATGAGAAAGGAAAACTGATTATGTTAGTTAATGATTTCTATTATGGGAAACATGAAGGTGATACCCAACAGGTACAACAGGAGCAGAAGACTCATACAACGTTTAAGTGCTTCAGCTGTCTGAAAGTTCTTAAAAATAATATAAG
Seq C2 exon
GTTTATGAACCACATGAAACATCATTTAGAGCTTGAGAAGCAGAGCAGTGAAAGCTGGGAAAGCCACACCACCTGCCAGCACTGTTACCGTCAGTTTCCCACCCCATTCCAGCTGCAGTGCCACATTGAAAGTACACACACACCTTACGAGTCTTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375-'8-7,'8-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.039 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF139121=zf-C2H2_6=PU(0.1=0.0)
C2:
PF139121=zf-C2H2_6=WD(100=29.9),PF139091=zf-H2C2_5=PU(12.0=3.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTTGTGTGTGGTCGCTCC
R:
CCAGCTTTCACTGCTCTGCTT
Band lengths:
293-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]