DreEX6004460 @ danRer10
Exon Skipping
Gene
ENSDARG00000104169 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr7:19383456-19384185:-
Coord C1 exon
chr7:19384124-19384185
Coord A exon
chr7:19383973-19384011
Coord C2 exon
chr7:19383456-19383865
Length
39 bp
Sequences
Splice sites
3' ss Seq
GCCGTTTTCTTATTTATTAGATA
3' ss Score
7.74
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GATTGGCTCGAACATCAGAACACAAATGTTCACATTGAGAACTGTAGGCGTCTTAGGAAACA
Seq A exon
ATACCCTGACTGGAAGGTCGAGTCTGTCCCTGTTTCAAG
Seq C2 exon
ATCTGAGTCCAAATCTGAACACAGCAGCTCAAAGCGGCACGCTCGATCACACTCATACTCCAGATCCCCCAGCCCAAAAAGACACCATGAGTCTTCAAGTCGACGCAAAAGATCGCGTTCCCGCACCCGGTCTCGATCTAGATCTAGATCTAGATCCAGATCCCGCTCGCGATCCCGCTCCCGTGGCTCTAGAAGGTATCGGCGTAGCAGAAGTCGCACCCGGTCCCCCCATAGGAAGTCTCGATCCAGTCCCTACAGACGGAGGTCTCGTAGTCCACCATCTCAACGGGCCAGATCTCCAGGTTACAGTAGGAGGTCTCCACGTCGCTCCAGTCCACGCCGGAGCAGCCCTTCCAGGCAGCAGAGATCAAGCAGTAGTGAACTTCTAGCTATGAAACTCATGTCATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104169-'4-7,'4-4,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.714 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCGAACATCAGAACACA
R:
TATGAGTGTGATCGAGCGTGC
Band lengths:
116-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]