RnoEX0101595 @ rn6
Exon Skipping
Gene
ENSRNOG00000014501 | Zfp638
Description
zinc finger protein 638 [Source:RGD Symbol;Acc:1309746]
Coordinates
chr4:115631196-115638066:+
Coord C1 exon
chr4:115631196-115631257
Coord A exon
chr4:115636561-115636599
Coord C2 exon
chr4:115637966-115638066
Length
39 bp
Sequences
Splice sites
3' ss Seq
GGTGTTTATTTTTCAAATAGATA
3' ss Score
5.8
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GACTGGATTCAGCATCAAAATACTTCCACCCATATTGAGAGCTGTCGGCAGTTACGTCAACA
Seq A exon
ATACCCTGATTGGAATCCTGAGATCCTCCCATCTAGAAG
Seq C2 exon
AAATGAGAGCAATAGGAAAGAAAATGAAACGCCAAGAAGACGTTCTCATTCCCCCAGTCCCAGACATTCTAGGAGATCAAGCTCAGGTCACAGAGTCCGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014501-'8-4,'8-3,9-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.381 A=0.429 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCGGCAGTTACGTCAACA
R:
GGACTCTGTGACCTGAGCTTG
Band lengths:
119-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]