MmuEX6005215 @ mm10
Exon Skipping
Gene
ENSMUSG00000030016 | Zfp638
Description
zinc finger protein 638 [Source:MGI Symbol;Acc:MGI:1203484]
Coordinates
chr6:83934949-83943021:+
Coord C1 exon
chr6:83934949-83935010
Coord A exon
chr6:83941245-83941283
Coord C2 exon
chr6:83942834-83943021
Length
39 bp
Sequences
Splice sites
3' ss Seq
AGTGTTTATTTTTCAAATAGATA
3' ss Score
6.02
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GACTGGATTCAGCATCAAAATACCTCCACCCACATTGAGAGCTGTCGGCAGTTAAGGCAACA
Seq A exon
ATACCCTGATTGGAATCCTGAGATCCTCCCATCCAGAAG
Seq C2 exon
AAATGAGAGCAATAGGAAAGAAAATGAAACTCCAAGAAGACGTTCTCATTCCCCCAGCCCCAGACATTCTAGGAGATCAAGCTCAGGTCACAGAATCCGTCGCTCTCGAAGTCCAGTCCGTTATATCTATAGACCAAGGAGTCGAAGTCCAAGAATTTGCCACCGTTTCATTTCTAAATATAGATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030016-'12-15,'12-13,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.451 A=0.643 C2=0.942
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCGGCAGTTAAGGCAACA
R:
ACGGATTCTGTGACCTGAGCT
Band lengths:
121-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types