GgaEX0000086 @ galGal3
Exon Skipping
Gene
ENSGALG00000000160 | Q9PVW5_CHICK
Description
NA
Coordinates
chrUn_random:48420070-48423219:-
Coord C1 exon
chrUn_random:48423158-48423219
Coord A exon
chrUn_random:48422906-48422944
Coord C2 exon
chrUn_random:48420070-48420377
Length
39 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTCTGACACCCACAGGTA
3' ss Score
9.88
5' ss Seq
GCGGTAACC
5' ss Score
5.41
Exon sequences
Seq C1 exon
GACTGGATCCTGCACCAGAACACCCCCTCCCACATCGAGAGCTGCCGCCACTTACGACAACA
Seq A exon
GTACCCCGATTGGAACCCCGAGTCTCGCTCTTCAAAGCG
Seq C2 exon
GAATGCTGCAGACAGGAAGGAGAACCAGACCCCGAAGCACCGCTCCAACTCAGCCAGCCCCGGCCCCAGGCGCCCGAGGCCCGCAGGCTCCAGCTATGCCCCCCGGCACTCCCGCTCGCGCTCCCGGAGCCCGGGCCGCTACCGGCCGTCACGGCCCCGGAGCCGAAGCCCCCGGCAGGTGCGGCGCCTGAGCCCCAGGCACTGGTCACGGTCCCCACAAAGGTCCAGGAACCCCCTGAGGGGCAGCCCGCGGCCGCAGCGGTCCTCCAGCAATGAGTGGTCATCGAGGAGGGCCACCCGATCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000160-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.762 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCCTGCACCAGAACACC
R:
CTGAGTTGGAGCGGTGCTTC
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]