MmuEX6005215 @ mm9
Exon Skipping
Gene
ENSMUSG00000030016 | Zfml
Description
zinc finger, matrin-like [Source:MGI Symbol;Acc:MGI:1203484]
Coordinates
chr6:83884943-83893135:+
Coord C1 exon
chr6:83884943-83885004
Coord A exon
chr6:83891239-83891277
Coord C2 exon
chr6:83892828-83893135
Length
39 bp
Sequences
Splice sites
3' ss Seq
AGTGTTTATTTTTCAAATAGATA
3' ss Score
6.02
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GACTGGATTCAGCATCAAAATACCTCCACCCACATTGAGAGCTGTCGGCAGTTAAGGCAACA
Seq A exon
ATACCCTGATTGGAATCCTGAGATCCTCCCATCCAGAAG
Seq C2 exon
AAATGAGAGCAATAGGAAAGAAAATGAAACTCCAAGAAGACGTTCTCATTCCCCCAGCCCCAGACATTCTAGGAGATCAAGCTCAGGTCACAGAATCCGTCGCTCTCGAAGTCCAGTCCGTTATATCTATAGACCAAGGAGTCGAAGTCCAAGAATTTGCCACCGTTTCATTTCTAAATATAGATCCAGATCCAGGTCCAGATCCAGGTCCCGTTCTCCATATCGTAGTCGGAATCTCCTTAGAAGAAGTCCGAAGTCCTATCGGTCAGCTAGCCCAGAGAGGACATCAAGAAAATCAGTGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030016-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.643 C2=0.942
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCGGCAGTTAAGGCAACA
R:
ACGGATTCTGTGACCTGAGCT
Band lengths:
121-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: