BtaEX0041455 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009242 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr11:13221490-13229712:-
Coord C1 exon
chr11:13229651-13229712
Coord A exon
chr11:13222526-13222564
Coord C2 exon
chr11:13221490-13221782
Length
39 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTATTCTCAAAATAGGTA
3' ss Score
7.54
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
Exon sequences
Seq C1 exon
GATTGGATTCAGCATCAAAATACATCTACTCATATTGAGAGTTGCCGACAGTTACGTCAACA
Seq A exon
GTATCCTGATTGGAATCCTGAGATCCTCCCATCAAGAAG
Seq C2 exon
AAATGAAGGCAATAGAAAAGAAAATGAAACTCCAAGAAGACGATCTCATTCCCCCAGTCCGAGGCATTCTAGGAGATCAAGCTCAAGTCACAGATTTCGTCGATCTCGAAGCCCCGTACGTTGTATGTATAGACCAAGAAGCCGAAGTCCAAGAATTTGCCATCGTTTTATTCCTAGATACAGATCCAGATCCCGTTCACCGTATCGAATGAGAAATCCATTTAGAGGTAGTCCAAAATGCTTTCGATCAGTTAGCCCTGAAAGGACATCAAGGAGATCAGAGAGATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009242-'2-5,'2-4,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.643 C2=0.939
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGCCGACAGTTACGTCA
R:
CGACGAAATCTGTGACTTGAGC
Band lengths:
126-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development