HsaEX6013878 @ hg38
Exon Skipping
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr2:71355719-71364252:+
Coord C1 exon
chr2:71355719-71355780
Coord A exon
chr2:71363153-71363191
Coord C2 exon
chr2:71363954-71364252
Length
39 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTATTTTCAAAATAGGTA
3' ss Score
7.55
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GATTGGATTCAGCATCAAAATACATCTACTCATATTGAGAGCTGTCGACAGTTACGTCAACA
Seq A exon
GTATCCTGATTGGAATCCTGAGATCCTCCCATCGAGAAG
Seq C2 exon
AAATGAGGGCAATAGAAAAGAAAATGAAACTCCACGAAGACGTTCTCATTCCCCCAGTCCTAGGCGTTCTAGAAGATCAAGCTCAAGTCACAGATTCCGTCGGTCTCGAAGCCCAATGCATTACATGTATAGGCCGAGAAGTCGAAGTCCAAGAATTTGCCATCGTTTCATTTCTAGATACAGATCCAGATCCAGATCCCGTTCACCATATCGAATTAGAAATCCATTTAGAGGTAGTCCAAAATGCTTTCGATCAGTTAGCCCTGAGAGGATGTCAAGGAGATCAGTGAGATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292-'22-16,'22-15,25-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=0.641 C2=0.950
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000264447fB8200
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCGACAGTTACGTCAACA
R:
AGACCGACGGAATCTGTGACT
Band lengths:
128-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains