DreEX6004570 @ danRer10
Exon Skipping
Gene
ENSDARG00000036420 | CR376787.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F9C1]
Coordinates
chr7:20160676-20164579:+
Coord C1 exon
chr7:20160676-20160780
Coord A exon
chr7:20163539-20163705
Coord C2 exon
chr7:20164440-20164579
Length
167 bp
Sequences
Splice sites
3' ss Seq
ATCATATATGTGCTTTACAGTTG
3' ss Score
6.94
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GAGCTTGTGTTTATAGTGGACGGAGCTAAGCAGCTGTTCCTGGTTTTCGTGTGTCAGTACGAGAATGACACACAGAACGACATCGTGGGCAGAACAGTCTTAAAT
Seq A exon
TTGGACCCAGACAACATGTTTAAGAAATGGAAAAAGGTCACCTGTTCTTTGGGCCATGTTGACGTAACCTTGTCACTCAAGTATGTGCCCCACCCTCTGGAGCCTCCAAGCACCACCCCTATCCTGCAGGAACCAGTGTTCTGTGTGCCCATTGGACAAGTGGCAAT
Seq C2 exon
GCAAGAGAGTGTGCTGGTCCCACACATTGTCCGTTCCTGTGTGGAGGAGGTTGAGAGAAGGGGTCTGAAAGAAGAAGGCATCTACAGAATTTCAGGAGCAAGCACGGAGATACAAGCACTAAAATATGCATTTAACACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036420-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(39.5=91.4)
A:
NO
C2:
PF0062022=RhoGAP=PU(26.0=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGTGTTTATAGTGGACGGA
R:
TGCATATTTTAGTGCTTGTATCTCCG
Band lengths:
234-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]