DreEX6007136 @ danRer10
Exon Skipping
Gene
ENSDARG00000035891 | acana
Description
aggrecan a [Source:ZFIN;Acc:ZDB-GENE-050208-221]
Coordinates
chr7:48497801-48500440:+
Coord C1 exon
chr7:48497801-48498094
Coord A exon
chr7:48499996-48500313
Coord C2 exon
chr7:48500421-48500440
Length
318 bp
Sequences
Splice sites
3' ss Seq
TTATATGTTCTTTATTTCAGAAA
3' ss Score
10.35
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GAAAAGTGTTTCACACAACTTCCCCAAACAAATTTACCTTTGAGGAGGCTGAAGCTCAGTGTTCCAAGCTGGGTGCCAAGTTGGCCACCACAGGACAGCTGTACCTGGCATGGAAAGGTGGTATGGATGTTTGCAACGCAGGCTGGCTGGCAGACCGAAGTGTCCGCTACCCCATCAACATCGCCCGACCGCAGTGTGGAGGAGGCCTGCTGGGAGTGCGCACCGTCTATCTGTTTCCCAATCAGACCGGTTACCCCCATCCAGATTCTCGCTACGATGCTTTCTGCTACTCTG
Seq A exon
AAACAGGCGATGAAGGTTCAGGCTTTTTCCCACTGGATCTAGAGCTGACCACAGATGGTGACAATGGTGTCTTGACTGTGGACACAATCACAGAAAGCCATACTGTCATTTCTAAGCCTGCCTCAACAGAAAGTGAGGTACAGGGAGAAGTTGTAACATATAAGCCTTCGGTGACCACCAGTGTTGAGAACCCATACACTGCACTGGATATTTCCCACGTCCTCCCTTCGCCACCAACCAGCTCTGTGGAAAAGGACCCTGACTTTGGATCCGGTTTATCTCAATCCAATAAGACCGAAGATACCATGTCTGCCACAG
Seq C2 exon
GAATAAAAAAATTGGTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035891-'4-13,'4-10,9-13=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.379 C2=0.000
Domain overlap (PFAM):
C1:
PF0019312=Xlink=WD(100=98.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]