MmuEX7003955 @ mm10
Exon Skipping
Gene
ENSMUSG00000030607 | Acan
Description
aggrecan [Source:MGI Symbol;Acc:MGI:99602]
Coordinates
chr7:79089603-79092487:+
Coord C1 exon
chr7:79089603-79089896
Coord A exon
chr7:79090939-79091343
Coord C2 exon
chr7:79092313-79092487
Length
405 bp
Sequences
Splice sites
3' ss Seq
GTCATTGCCTCCTGTCCCAGGTG
3' ss Score
8.73
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTGAGGTCTTTTATGCGACATCCCCAGAGAAATTCACCTTCCAGGAGGCAGCCAACGAGTGCCGGAGGCTGGGGGCACGCTTGGCCACCACAGGCCAGCTCTACCTGGCCTGGCAGGGCGGTATGGACATGTGCAGCGCTGGCTGGCTGGCGGACCGCAGCGTGCGCTACCCCATCTCCAAGGCTCGGCCCAACTGCGGGGGCAACCTCCTGGGTGTAAGGACTGTCTATCTACACGCCAACCAGACAGGCTATCCTGATCCCTCATCCCGATATGACGCCATCTGTTACACAG
Seq A exon
GTGAAGATTTTGTAGACATCCCAGAAAACTTCTTCGGGGTGGGTGGTGAAGACGACATCACCATCCAGACGGTGACCTGGCCAGACCTGGAGCTGCCCCTGCCCCGTAATGTCACAGAGGGAGAGGCCCTGGGCAGCGTGATCCTTACAGCAAAGCCCATCTTTGACCTGTCCCCCACTATCTCAGAGCCGGGGGAGGCCCTCACACTTGCCCCTGAAGTGGGGAGCACAGCCTTCCCAGAGGCTGAGGAGAGAACTGGAGAAGCCACCAGACCCTGGGGCTTTCCTGCAGAAGTCACACGTGGGCCGGACTCTGCCACTGCCTTCGCCAGTGAGGACCTGGTAGTGCGAGTGACCATCTCTCCAGGTGCAGCTGAAGTCCCTGGTCAGCCCCGCTTGCCAGGGG
Seq C2 exon
GAGTTGTATTCCACTATCGCCCAGGCTCCACCAGATACTCTCTGACATTTGAGGAGGCACAGCAGGCCTGCATGCACACCGGGGCCGTCATTGCCTCTCCTGAGCAGCTCCAAGCTGCCTATGAGGCAGGCTATGAGCAGTGTGATGCTGGCTGGCTGCAGGACCAGACCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030607-'4-7,'4-5,9-7=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.360 C2=0.034
Domain overlap (PFAM):
C1:
PF0019312=Xlink=WD(100=98.0)
A:
PF0019312=Xlink=PU(0.1=0.0)
C2:
PF0019312=Xlink=PU(60.4=98.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGACATCCCCAGAGAAATT
R:
CTGCTGTGCCTCCTCAAATGT
Band lengths:
346-751
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types