BtaEX6076667 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016158 | ACAN
Description
aggrecan [Source:HGNC Symbol;Acc:HGNC:319]
Coordinates
chr21:20835037-20839390:+
Coord C1 exon
chr21:20835037-20835330
Coord A exon
chr21:20836594-20836998
Coord C2 exon
chr21:20839216-20839390
Length
405 bp
Sequences
Splice sites
3' ss Seq
GTCTCTGCCCCCTGCCCCAGGTG
3' ss Score
10.24
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCGAGGTCTTCTATGCAACATCCCCGGAGAAGTTCACCTTCCAAGAGGCAGCCAACGAGTGCCGGCGGCTGGGCGCCCGGCTGGCCACCACGGGCCAACTCTACCTGGCCTGGCAGGGTGGCATGGACATGTGCAGCGCCGGCTGGCTGGCTGACCGCAGCGTGCGATACCCCATCTCCAAGGCCCGGCCTAACTGCGGGGGCAACCTCCTGGGAGTGAGGACCGTCTACCTGCACGCCAACCAGACGGGCTACCCTGACCCTTCATCCCGCTATGACGCCATCTGCTACACAG
Seq A exon
GTGAAGACTTTGTGGACATCCCAGAAAGCTTTTTCGGGGTGGGCGGTGAGGAGGACATCACCATCCAGACGGTGACCTGGCCTGACGTGGAGCTGCCCCTGCCCCGAAATATCACTGAGGGTGAAGCCCGAGGCAGCGTGATCCTCACGGCAAAGCCCGACTTTGAAGTCTCCCCCACCGCCCCGGAACCCGAGGAGCCTTTCACGTTTGTCCCTGAAGTAAGGGCCACTGCATTCCCCGAAGTAGAGAACAGGACTGAAGAGGCCACCCGGCCCTGGGCCTTTCCCAGAGAGTCCACCCCCGGCCTGGGAGCCCCCACGGCCTTCACCAGCGAGGACCTCGTCGTGCAGGTGACCTTAGCCCCAGGTGCGGCTGAGGTCCCTGGGCAGCCACGACTGCCAGGGG
Seq C2 exon
GAGTCGTGTTCCACTACCGCCCAGGCTCCTCCCGCTACTCGCTGACCTTTGAGGAGGCCAAGCAGGCCTGCCTGCGCACCGGGGCCATCATCGCCTCGCCCGAGCAGCTCCAGGCCGCCTATGAAGCAGGCTACGAGCAGTGTGACGCCGGCTGGCTGCAGGACCAGACAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016158-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.574 C2=0.017
Domain overlap (PFAM):
C1:
PF0019312=Xlink=WD(100=98.0)
A:
PF0019312=Xlink=PU(0.1=0.0)
C2:
PF0019312=Xlink=PU(60.4=98.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATGCAACATCCCCGGAGA
R:
CCTCCTCAAAGGTCAGCGAGT
Band lengths:
342-747
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]