GgaEX6008102 @ galGal4
Exon Skipping
Gene
ENSGALG00000006725 | ACAN
Description
aggrecan core protein precursor [Source:RefSeq peptide;Acc:NP_990286]
Coordinates
chr10:12559111-12562634:-
Coord C1 exon
chr10:12562338-12562634
Coord A exon
chr10:12559792-12560304
Coord C2 exon
chr10:12559111-12559285
Length
513 bp
Sequences
Splice sites
3' ss Seq
TGCTTTGTCTCCCAATGTAGGTG
3' ss Score
10.51
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GCAAAGTCTTCTACGCCACCTCCCCCGAGAAGTTCACCTTCCAGGAAGCTTTTGACAAATGCCACAGCTTGGGAGCCCGCCTGGCCACCACGGGCGAGCTGTACTTGGCCTGGAAGGATGGCATGGACATGTGCAGTGCGGGCTGGCTGGCTGACCGCAGCGTTCGCTACCCCATTTCCAGAGCACGGCCCAATTGTGGAGGGAACCTGGTGGGCGTGCGGACCGTTTACCTGAACCCTGCCAACCAGACAGGGTACCCTCACCCCAGCTCACGCTACGATGCCATCTGTTACAGTG
Seq A exon
GTGATGACTTCGAGGCTCTGGTCCCAGGGCTGTTCACTGACGAGGTTGGGACTGAGCTGGGCAGTGCTTTTACCATACAGACCGTCACACAGACTGAGGTGGAGCTGCCCCTGCCACGCAATGTCACAGAAGAGGAGGCCCGTGGCAGCATCGCTACCCTGGAGCCCATGGAGATCACAGCCACCGCCACTGAGCTGTATGAGGCCTTCACCGTCCTGCCTGACCTCTTTGCCACCAGTGTCACAGTAGAGACAGCTTCCCCAAGGGAAGAGAACGTGACCAGAGAGGAGATCACAGGGATATGGGCTGTGCCTGAAGAGGTCACTACATCGGTCTCAGGCACTGCTTTCACCACCGGAATGGCAGAGGTGAGCTCAGTGGAAGAGGCCATAGCAGTGACTGCCACACCAGGACTGGAGTCTGCCTCTCCATTCACCATAGAAGATCATCTCGTGCAAGTGACAGCAGCCCCTGATGTTGCCCTCCTCCCCAGGCAGCCCATTTCCCCCACTG
Seq C2 exon
GTGTGGTGTTCCACTACCGTGCTGCCACCAGCAGATACGCCTTCTCCTTCATCCAAGCCCAGCAGGCCTGCCTGGAGAACAATGCCGTTATTGCCACTCCCGAGCAGCTCCAGGCTGCCTACGAGGCTGGCTTTGATCAGTGCGATGCCGGCTGGCTGCGGGACCAGACGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006725-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.262 C2=0.000
Domain overlap (PFAM):
C1:
PF0019312=Xlink=WD(100=98.0)
A:
PF0019312=Xlink=PU(0.1=0.0)
C2:
PF0019312=Xlink=PU(60.4=98.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGTCTTCTACGCCACCT
R:
GGCTTGGATGAAGGAGAAGGC
Band lengths:
356-869
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]