DreEX6102146 @ danRer10
Exon Skipping
Gene
ENSDARG00000045799 | acanb
Description
aggrecan b [Source:ZFIN;Acc:ZDB-GENE-100422-16]
Coordinates
chr25:19119862-19121114:-
Coord C1 exon
chr25:19120821-19121114
Coord A exon
chr25:19120251-19120547
Coord C2 exon
chr25:19119862-19120045
Length
297 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTAATTACTTTGCAGATA
3' ss Score
8.67
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
GCAGAGTGTTCTACTCTATGTCTGTGGAAAAGTTCACCTTTGCAGATGCTGAAGACCAATGTGCAAAGTTAGGAGCCCAATTAGCTACCACAGGACAGCTGTACCTAGCATGGAAGACTGGCATGGATGTGTGCAACGCTGGCTGGCTTGCAGACAGGAGTGTGCGGTACCCTATAAATATAGCTAGACCCCAATGTGGTGGGGGGCTTTTGGGAGTGCGAACAGTTTACCTGTTTCCAAATCAGACTGGTTATCCATACCCAGACTCCCGCTATGATGCAATCTGTTATGAAG
Seq A exon
ATAAAGAAGATAAGGTCTTAATAAAGACCACGCCATTTCCAGAAATATACACTACCACCGAGTCAGTGTTAACAGTGGCTACAGTTACATCAAGCTCTTCAGATTATACAGAACAAGTGACCACTGAAGGAGAGGTTCGTGGCCAAATATTGACAGATGAGCCTTTTAACACAACAAGCACAGAAAGTCCCCTATCTCCACCTCTCAACATAACTGATGTTGAGGAAGACATCATCAATGTGGCCACAGCTCCACCTTCCCTGGAACATGCAATTCCCAGTATCAATGTCACTGCTA
Seq C2 exon
AAATCAAGGGAGTGGTATTCCACTATCGTGCTGAATCTGGGCGCTATGCTTACACTTATGAGGAAGCACAAGATGCTTGTCAGAAACTGGGAGCAGTCATTGCCACTCCTGAGCTCCTTCAGGCTGCTTATGAAGCTGGCCTTCATCAATGCAGTGCAGGTTGGCTACAAGATCAAACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045799-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.370 C2=0.000
Domain overlap (PFAM):
C1:
PF0019312=Xlink=WD(100=98.0)
A:
NO
C2:
PF0019312=Xlink=PU(60.4=93.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTAGCATGGAAGACTGGCA
R:
GAGCTCAGGAGTGGCAATGAC
Band lengths:
308-605
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]