RnoEX6003370 @ rn6
Exon Skipping
Gene
ENSRNOG00000028992 | Acan
Description
aggrecan [Source:RGD Symbol;Acc:68358]
Coordinates
chr1:140796193-140803099:+
Coord C1 exon
chr1:140796193-140796367
Coord A exon
chr1:140800986-140801390
Coord C2 exon
chr1:140802972-140803099
Length
405 bp
Sequences
Splice sites
3' ss Seq
GTCTTTGCCTCCTTCCCCAGGTG
3' ss Score
12.37
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCATTGTGTTCCACTACAGAGCTATTTCCACACGCTACACACTGGACTTTGACCGAGCCCAGCGGGCTTGCCTTCAGAACAGCGCCATCATCGCCACCCCTGAGCAACTGCAGGCCGCCTATGAGGATGGCTTCCACCAGTGTGATGCAGGCTGGCTGGCTGATCAGACAGTCAG
Seq A exon
GTGAAGACTTTGTAGACATCCCAGAAAACTTCTTCGGAGTGGGTGGTGAAGAGGACATCACCATCCAGACAGTGACCTGGCCAGATCTGGAGCTGCCCCTGCCCCGTAATATTACGGAGGGAGAAGCCCGGGGCAATGTGATCCTCACTGCAAAGCCCATCTTCGACATGTCCCCCACTGTCTCAGAGCCTGGGGAGGCCCTCACACTTGCCCCTGAAGTGGGGACCACAGTCTTCCCTGAGGCTGGGGAGAGAACTGAAAAGACCACCAGGCCCTGGGGCTTTCCCGAGGAAGCCACACGTGGGCCTGATTCTGCCACTGCCTTCGCCAGTGAGGACCTGGTGGTGCGAGTGACCATCTCTCCAGGTGCAGTTGAGGTCCCTGGTCAGCCCCGCTTGCCAGGGG
Seq C2 exon
ATACCCCATTGTGAGCCCACGGACCCCATGTGTGGGTGACAAGGACAGCAGCCCCGGAGTCAGGACCTATGGCGTGCGCCCATCATCAGAAACCTATGATGTCTACTGCTACGTGGACAAGCTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028992-'3-10,'3-6,6-10=AN
Average complexity
A_C3
Mappability confidence:
92%=100=86%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.441 C2=0.102
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PU(60.4=98.3)
A:
PF0019312=Xlink=PU(0.1=0.0)
C2:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGTGTTCCACTACAGAGCT
R:
CCTCAAGCTTGTCCACGTAGC
Band lengths:
303-708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]