DreEX6007820 @ danRer10
Exon Skipping
Gene
ENSDARG00000043313 | ank2b
Description
ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
Coordinates
chr7:57664885-57666338:-
Coord C1 exon
chr7:57666240-57666338
Coord A exon
chr7:57665610-57665708
Coord C2 exon
chr7:57664885-57665082
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCCCCTGTGTTTTACACCAGCGT
3' ss Score
7.07
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
Exon sequences
Seq C1 exon
TCTGGTCTCACACCAATCCACGTGGCAGCCTTCATGGGTCACCTCAACATTGTTCTTCTACTGCTGCAGAATGGAGCTTCTCCTGATGTCAGCAACATA
Seq A exon
CGTGGAGAGACTGCTTTGCATATGGCGGCCCGTGCTGGACAAATGGAGGTTGTGCGGTGTCTTCTAAGGAATGGAGCCATGGTGGATGCAAGAGCAAGG
Seq C2 exon
GAGGATCAGACTCCTCTTCACATTGCATCTCGTCTGGGTAAGACAGAGATTGTCCAGCTTCTGCTTCAACACATGGCTCATCCAGACGCAGCAACCGCTAATGGTTACACCCCGCTTCACATTGCTGCACGTGAGGGACATTTGGACGTTACTACTGTGCTATTAGAAGCTGGAGCTGCTCACTCCTTAGCTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043313-'22-19,'22-18,23-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(35.2=93.9)
A:
PF127962=Ank_2=PD(43.7=93.9),PF127962=Ank_2=PU(8.3=18.2)
C2:
PF127962=Ank_2=PD(82.1=97.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCACACCAATCCACGTGG
R:
GCCATGTGTTGAAGCAGAAGC
Band lengths:
172-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]