MmuEX6073958 @ mm9
Exon Skipping
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126719734-126732235:-
Coord C1 exon
chr3:126732137-126732235
Coord A exon
chr3:126726210-126726308
Coord C2 exon
chr3:126719734-126719931
Length
99 bp
Sequences
Splice sites
3' ss Seq
CGCAATCTGTTTTTTGGCAGCGT
3' ss Score
6.24
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
TCTGGCCTCACACCAATACATGTGGCTGCCTTCATGGGCCACTTGAACATTGTCCTCCTTCTGCTGCAGAACGGAGCCTCTCCAGATGTCACTAACATT
Seq A exon
CGTGGTGAGACAGCTCTTCACATGGCGGCCCGGGCTGGGCAGGTGGAAGTGGTCCGATGTCTTCTGAGGAATGGTGCTCTTGTGGATGCCAGAGCCAGG
Seq C2 exon
GAGGAGCAGACACCTTTACACATTGCCTCCAGGCTGGGGAAGACGGAAATTGTCCAGCTGCTTCTACAGCATATGGCTCACCCCGATGCAGCCACTACAAATGGGTACACACCACTACACATCTCTGCTCGGGAAGGACAGGTAGACGTGGCCTCTGTCCTGCTGGAAGCGGGAGCAGCCCATTCCTTAGCGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826-'23-22,'23-21,25-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.106
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=93.9)
A:
PF127962=Ank_2=PU(23.3=60.6)
C2:
PF127962=Ank_2=PD(74.4=97.0),PF127962=Ank_2=PU(8.3=9.1)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCACTTGAACATTGTCC
R:
ATTTGTAGTGGCTGCATCGGG
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: