RnoEX6011461 @ rn6
Exon Skipping
Gene
ENSRNOG00000011076 | Ank2
Description
ankyrin 2 [Source:RGD Symbol;Acc:620156]
Coordinates
chr2:231320497-231333171:-
Coord C1 exon
chr2:231333091-231333171
Coord A exon
chr2:231327416-231327514
Coord C2 exon
chr2:231320497-231320694
Length
99 bp
Sequences
Splice sites
3' ss Seq
AATCTTTGTTTTCCTGGCAGCGT
3' ss Score
8.25
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
CATGTGGCTGCCTTCATGGGCCACTTGAACATTGTCCTCCTTCTGCTGCAGAACGGAGCCTCTCCAGATGTCACTAACATT
Seq A exon
CGTGGTGAGACGGCGCTTCACATGGCGGCCCGGGCTGGGCAGGTGGAAGTGGTTCGATGTCTCCTGAGGAACGGCGCTCTTGTGGATGCCAGAGCCAGG
Seq C2 exon
GAGGAGCAGACGCCTTTACATATTGCCTCCAGACTGGGTAAGACAGAAATCGTCCAGCTGCTGTTACAACACATGGCTCATCCAGACGCAGCCACCACAAATGGGTACACACCACTACACATTTCTGCTCGGGAAGGACAGGTAGATGTGGCCTCTGTCCTGCTGGAAGCTGGAGCTGCACACTCATTAGCTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011076-'39-36,'39-33,43-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.104
Domain overlap (PFAM):
C1:
PF136371=Ank_4=PU(53.1=96.3)
A:
PF138571=Ank_5=PD(16.3=24.2),PF127962=Ank_2=PU(23.3=60.6)
C2:
PF127962=Ank_2=PD(74.4=97.0),PF127962=Ank_2=PU(8.3=9.1)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCACTTGAACATTGTCC
R:
TGTGTACCCATTTGTGGTGGC
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]