MmuEX6073958 @ mm10
Exon Skipping
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:127016816-127029317:-
Coord C1 exon
chr3:127029219-127029317
Coord A exon
chr3:127023292-127023390
Coord C2 exon
chr3:127016816-127017013
Length
99 bp
Sequences
Splice sites
3' ss Seq
CGCAATCTGTTTTTTGGCAGCGT
3' ss Score
6.24
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
TCTGGCCTCACACCAATACATGTGGCTGCCTTCATGGGCCACTTGAACATTGTCCTCCTTCTGCTGCAGAACGGAGCCTCTCCAGATGTCACTAACATT
Seq A exon
CGTGGTGAGACAGCTCTTCACATGGCGGCCCGGGCTGGGCAGGTGGAAGTGGTCCGATGTCTTCTGAGGAATGGTGCTCTTGTGGATGCCAGAGCCAGG
Seq C2 exon
GAGGAGCAGACACCTTTACACATTGCCTCCAGGCTGGGGAAGACGGAAATTGTCCAGCTGCTTCTACAGCATATGGCTCACCCCGATGCAGCCACTACAAATGGGTACACACCACTACACATCTCTGCTCGGGAAGGACAGGTAGACGTGGCCTCTGTCCTGCTGGAAGCGGGAGCAGCCCATTCCTTAGCGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826-'49-59,'49-58,53-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.106
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=93.9)
A:
PF127962=Ank_2=PU(23.3=60.6)
C2:
PF0002325=Ank=WD(100=50.0),PF0002325=Ank=WD(100=50.0),PF127962=Ank_2=PU(8.3=9.1)
Main Skipping Isoform:
ENSMUST00000182064fB5779
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCACTTGAACATTGTCC
R:
ATTTGTAGTGGCTGCATCGGG
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types