GgaEX6035114 @ galGal3
Exon Skipping
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58378910-58382768:-
Coord C1 exon
chr4:58382670-58382768
Coord A exon
chr4:58380199-58380297
Coord C2 exon
chr4:58378910-58379107
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTTACTTTTTTGCAGCGT
3' ss Score
10.48
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
TCGGGCCTCACACCAATACATGTGGCTGCATTTATGGGCCACTTGAACATAGTCCTCCTTCTGCTGCAGAATGGAGCCTCTCCCGATGTCACTAACATT
Seq A exon
CGTGGAGAAACTGCACTGCACATGGCAGCACGTGCCGGACAGGTGGAAGTAGTTCGTTGTCTCCTGAGAAATGGGGCTCTAGTTGATGCCCGAGCCAGG
Seq C2 exon
GAAGAACAGACTCCACTGCACATTGCCTCTCGCTTGGGTAAAACAGAGATTGTCCAGCTTCTGCTACAGCACATGGCCCACCCTGATGCTGCAACAACTAATGGATACACTCCACTGCACATCTCTGCCAGAGAGGGACAAGTTGATGTTGCATCAGTTCTCCTAGAGGCAGGTGCCTCACACTCCATGTCCACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044-'19-21,'19-19,20-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.106
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(46.4=100)
A:
PF127962=Ank_2=PD(44.9=93.9)
C2:
PF0002325=Ank=WD(100=50.0),PF0002325=Ank=WD(100=50.0),PF127962=Ank_2=PU(8.3=9.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTCTCCCGATGTCACTA
R:
TCAACTTGTCCCTCTCTGGCA
Band lengths:
172-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]