DreEX6007954 @ danRer10
Exon Skipping
Gene
ENSDARG00000099177 | dok1b
Description
docking protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2063]
Coordinates
chr7:58935593-58943520:+
Coord C1 exon
chr7:58935593-58935683
Coord A exon
chr7:58938255-58938427
Coord C2 exon
chr7:58941916-58943520
Length
173 bp
Sequences
Splice sites
3' ss Seq
GAATCTGTTCTGTTTTGCAGTTA
3' ss Score
8.25
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
GGAGGAAGTGGTTCACTTGGTAGTTCTGACTCAAATGGACAGCAGGAGCTTCAAATGGCAGAAAATCTCATTTATTACTCCAGGGAAGAAG
Seq A exon
TTAATGAATTTTTGGTGACTGTTCAAAGGACTGAAGCATCAGAGCGCTGTGGTCTGTCTGGTAACTACTGGCTCAGGGCTAACATGGACAACCTTATCTTGAAGGATCCCAAGACTAAAAAGGATTTACTTATATGGCCCTACAAGCTTCTCCGTCGCTATGGAAGAGACAGA
Seq C2 exon
GTTATGTTCTCCTTTGAAGCCGGTCGACGCTGTGAATCTGGCCCAGGGAACTTCACTTTTGAGACAAAGCAGGGAAACGAGATATTCCACATTGTTGAGGAATCCATTCGTGAGCAGAAAGCCCAAGCTGAAGAACGACACCAAAGCTGTCCATCATTAGACTCTGACTGCCCAGCTCTCCAGCAAATTCGTGCTGCCATCTCAGAAGCAAACAGTCGTGAACCAGATGGAGATTCTGGTGGTAGCAAGCCTGGGTCCGCAGATGGTGTCTTTGGTCGTAAGGAGAACGATGGGAAAAATTTAAAGGTCCGAAGCCTTCCAGAGCCACCACCCCCAGTTGGTGGAACCCCACCTCGTTCTCCCATGCCTCATGGCTCCAAAAATCAGTTAGATGAGCAAGCCAGTCTGTATTCAGAGCCTGCTGACTCGGTGCGTGCACCACCAAGTCTAGGAGACTGTTTGTACTCAGACCCGGTGGACAGTATCAAAGTCATGCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099177-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.000 C2=0.882
Domain overlap (PFAM):
C1:
PF0217412=IRS=PU(1.0=3.2)
A:
PF0217412=IRS=FE(57.0=100)
C2:
PF0217412=IRS=PD(40.0=10.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAGCTTCAAATGGCAGA
R:
ACGAATTTGCTGGAGAGCTGG
Band lengths:
242-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]